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Strain Citations 2023

2024-01-08 17:27

Title

Link

Journal

Strain and Allele name

Strain number

Pathogenic bacteria modulate pheromone response to   promote mating

https://www.nature.com/articles/s41586-022-05561-9#Sec14

Nature

PHX4262 str-44(syb4262)
  PHX5943 str-44(syb5943)

2

A BORC-dependent molecular pathway for vesiculation of   cell corpse phagolysosomes

https://www.cell.com/current-biology/fulltext/S0960-9822(22)01978-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982222019789%3Fshowall%3Dtrue

Current Biology

PHX2255 arl-8(syb2255[Q75L]) IV
  PHX2260 arl-8(syb2260[T34N]) IV
  PHX2427 arl-8(syb2427[arl-8::mCitrine]) IV
  PHX2959 arl-8(syb2427[arl-8::mCitrine] syb2959[Q75L]) IV
  PHX2960 arl-8(syb2427[arl-8::mCitrine] syb2960[D133N]) IV
  PHX3086 arl-8(syb2427[arl-8::mCitrine] syb3085[T34N]) IV / nT1[qIs51] (IV; V)
  PHX3658 arl-8(syb2427[arl-8::mCitrine] syb3658[D133A]) IV
  PHX4004 sam-4(syb4007[sam-4::mScarlet-I] II
  PHX4105 sam-4(syb4105[sam-4::mScarlet-I::ZF1] II
  PHX5797 unc-116(syb5797[unc-116::mCit::ZF1] III
  PHX5851 ctns-1(syb5851[ctns-1::mCitrine]) II
  PHX6675 blos-7(syb6675[L30A]) IV

12

N-Glycosylated Intestinal Protein BCF-1 Shapes   Microbial Colonization by Binding Bacteria via its Fimbrial Protein

https://www.cell.com/cell-reports/fulltext/S2211-1247(23)00004-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124723000049%3Fshowall%3Dtrue

Cell Reports

PHX4067, syb4067 [bcf-1p::bcf-1::3xflag::gfp]

1

Sex-specificity of the C. elegans metabolome

https://www.nature.com/articles/s41467-023-36040-y

Nature Communications

PHX3933 cest-5.1(syb1131);cest-5.2(syb3933)

1

Exercise preserves physical fitness during aging   through AMPK and mitochondrial dynamics

https://www.pnas.org/doi/10.1073/pnas.2204750120

PNAS

sybIs3765
  sybIs3776

2

The role of crm-1 in ionizing radiation-induced nervous   system dysfunction in Caenorhabditis elegans

https://journals.lww.com/nrronline/Fulltext/2023/06000/The_role_of_crm_1_in_ionizing_radiation_induced.38.aspx

Neural Regeneration Research

syb5872

1

RPI-1 (human DCDC2) displays functional redundancy with   Nephronophthisis 4 in
  regulating cilia biogenesis in
C. elegans

https://journals.tubitak.gov.tr/biology/vol47/iss1/7/

Turkish Journal of Biology

rpi-1(syb722)

1

N-glycan antennal modifications are altered in   Caenorhabditis elegans lacking the HEX-4 N-acetylgalactosamine-specific   hexosaminidase

https://www.jbc.org/article/S0021-9258(23)00185-0/fulltext#secsectitle0135

Journal of Biological Chemistry

syb5035

1

Loss of mammalian glutaminase orthologs impairs sperm   function in Caenorhabditis elegans

https://www.cell.com/iscience/fulltext/S2589-0042(23)00283-3#%20

iScience

syb1403
  syb1405
  syb1406

3

C. elegans vab-6 encodes a KIF3A kinesin and functions   cell non-autonomously to regulate epidermal morphogenesis

https://www.sciencedirect.com/science/article/pii/S0012160623000374?via%3Dihub

Developmental Biology

PHX7132 klp-20(syb7132)

1

Cell context-dependent CFI-1/ARID3 functions control   neuronal terminal differentiation

https://www.cell.com/cell-reports/fulltext/S2211-1247(23)00231-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124723002310%3Fshowall%3Dtrue#%20

Cell Reports

PHX3680 syb3680[2xNLS::mScarlet::SL2::glr-4]
  PHX1778 syb1778[3xFLAG::cfi-1]
  PHX5348 syb5348[2xNLS::mScarlet::SL2::glr-4 with 11 CFI-1 binding sites   mutated]
  PHX2344 unc-30 (syb2344[unc-30::mNG::3xFLAG::AID]
  PHX5229 degl-2(syb5229[degl-2::SL2::gfp::H2B]) IV

5

Meisosomes, folded membrane microdomains between the   apical extracellular matrix and epidermis

https://elifesciences.org/articles/75906

eLife

PHX5715 vha-5(syb5715[VHA-5::sfGFP]) IV
  PHX2235 rol-6(syb2235[ROL-6::mScarlet]) II

2

A sleep-active neuron can promote survival while sleep   behavior is disturbed

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010665

PLoS Genetics

PHX1433, PHX1445, PHX1464, PHX2193, PHX2493, PHX3190,   PHX4110, PHX4416

8

A proinsulin-dependent interaction between ENPL-1 and   ASNA-1 in neurons is required to maintain insulin secretion in C. elegans

https://journals.biologists.com/dev/article/150/6/dev201035/297263/A-proinsulin-dependent-interaction-between-ENPL-1

Development

syb2249
  syb3050

2

JKK-1(3E), a JKK-1 mutant with predicted phosphomimetic   amino acid substitutions

https://www.micropublication.org/journals/biology/micropub-biology-000785

microPublication Biology

PHX3225: jkk-1(syb3225)

1

The ATPase activity of the phosphatidylethanolamine   flippase TAT-5 inhibits extracellular vesicle budding from the plasma   membrane

https://www.micropublication.org/journals/biology/micropub-biology-000779

microPublication Biology

PHX2519 tat-5(syb2519[E246Q]) /   tmC18[dpy-5(tmIs1200[myo-2p::Venus])] I
  PHX2596 tat-5(syb2414[D244T]) / tmC18[dpy-5(tmIs1200[myo-2p::Venus])] I

2

Hypoxia induces food leaving in C. elegans

https://www.micropublication.org/journals/biology/micropub-biology-000776

microPublication Biology

syb852
  syb842

2

The heterochronic LIN-14 protein is a BEN domain   transcription factor

https://www.cell.com/current-biology/fulltext/S0960-9822(23)00155-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982223001550%3Fshowall%3Dtrue

Current Biology

PHX5773: wt(+)/szT1[lon-2(e678); umnIs39]   I;lin-14(syb5772)/szT1[umnIs40] X

1

Cold temperature extends longevity and prevents   disease-related protein aggregation through PA28γ-induced proteasomes

https://www.nature.com/articles/s43587-023-00383-4

Nature Aging

PHX6491

1

Ageing-associated changes in transcriptional elongation   influence longevity

https://www.nature.com/articles/s41586-023-05922-y

Nature

syb2315

1

Regulation of the circadian clock in C. elegans by   clock gene homologs kin-20 and lin-42

https://www.biorxiv.org/content/10.1101/2023.04.13.536481v1.full

bioRxiv

syb4198
  syb651

2

AdipoR2 recruits protein interactors to promote fatty   acid elongation and membrane fluidity

https://www.jbc.org/article/S0021-9258(23)01827-6/fulltext

Journal of Biological Chemistry

syb364
  syb1478
  syb2306

3

The dynamin GTPase mediates regenerative axonal fusion   in Caenorhabditis elegans by regulating fusogen levels

https://academic.oup.com/pnasnexus/article/2/5/pgad114/7157250?login=true

PNAS Nexus

sybIs2534
  sybIs2535

2

Dissecting the functional organization of the C.   elegans   serotonergic system at whole-brain scale

https://www.cell.com/cell/fulltext/S0092-8674(23)00419-1?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867423004191%3Fshowall%3Dtrue

Cell

PHX4186 lgc-50(syb4186)
  PHX1805 ser-1(syb1805)
  PHX4754 ser-4(syb4754)
  PHX4159 ser-5(syb4159)
  PHX1941 ser-7(syb1941)
  PHX1841 mod-1(syb1841)-
实际是PHX1891
  PHX5397 mod-1(syb5397)

7

CRISPR/Cas9 Mediated Fluorescent Tagging of   Caenorhabditis elegans SPE-38 Reveals a Complete Localization Pattern in Live   Spermatozoa

https://www.mdpi.com/2218-273X/13/4/623

Biomolecules

syb6556

1

Cisplatin toxicity is counteracted by the activation of   the p38/ATF-7 signaling pathway in post-mitotic C. elegans

https://www.nature.com/articles/s41467-023-38568-5#Abs1

Nature Communications

syb2311
  syb2456
  syb4220
  syb5891
  syb6493

5

A novel N6-Deoxyadenine   methyltransferase METL-9modulates C. elegans immunity via   dichotomousmechanisms

https://www.nature.com/articles/s41422-023-00826-y#Abs1

Cell Research

PHX2872 metl-9(syb2872)

1

Mechanisms of Nuclear Pore Complex disassembly by the   mitotic Polo-Like Kinase 1 (PLK-1) in C. elegans embryos

https://pubmed.ncbi.nlm.nih.gov/36865292/

Science Advances

syb1469
  syb1475
  syb1526
  syb1534

4

Apical-basal polarity of the spectrin cytoskeleton in   the C. elegans vulva

https://www.micropublication.org/journals/biology/micropub-biology-000863

microPublication Biology

syb4954

1

Multiple pals gene modules control a balance between   immunity and development in Caenorhabditis elegans

https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011120

PLOS Pathogens

syb4005
  syb3980
  syb3744

3

Modulation of inner junction proteins contributes to   axoneme differentiation

https://www.pnas.org/doi/10.1073/pnas.2303955120#supplementary-materials

PNAS

syb3841                                                                         syb3843

2

Sex-Specific Developmental Gene Expression Atlas   Unveils Dimorphic Gene Networks in
  C. elegans

https://www.biorxiv.org/content/10.1101/2023.08.05.552096v1

bioRxiv

syb4915
  syb4956
  syb4992

3

DNSN-1 recruits GINS for CMG helicase assembly during   DNA replication initiation in Caenorhabditis elegans

https://www.science.org/doi/10.1126/science.adi4932

SCIENCE

syb5085
  syb5036
  syb6461
  syb7234
  syb6574
  syb6840
  syb2118
  syb6509
  syb6425
  syb6453
  syb6420
  syb6412
  syb6564
  syb7840

14

TDP-1 and FUST-1 co-inhibit exon inclusion and control   fertility together with transcriptional regulation

https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkad665/7243460?login=true

Nucleic Acids Research

syb3345
  syb6090

2

Global histone H2B degradation regulates
  insulin/IGF signaling-mediated nutrient stress

https://doi.org/10.15252/embj.2022113328

The EMBO Journal

syb3841
  syb3843
  syb4746

3

Post-transcriptional repression of CFP-1 expands the   regulatory repertoire of LIN-41/TRIM71

https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkad729/7260976?login=false

Nucleic Acids Research

syb3876

1

The kleisin subunit controls the function of C. elegans   meiotic cohesins by determining the mode of DNA binding and differential   regulation by SCC-2 and WAPL-1

https://elifesciences.org/articles/84138

eLife

syb803
  syb751
  syb1273

3

The proprotein convertase BLI-4 promotes collagen   secretion prior to assembly of the Caenorhabditis elegans cuticle

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010944

PLoS Genetics

syb3685
  syb3691
  syb5321

3

Mitochondrial GTP metabolism controls reproductive   aging in C. elegans

https://www.sciencedirect.com/science/article/pii/S1534580723004355?via%3Dihub

Developmental Cell

syb3617
  syb4685

2

A sex-specific switch in a single glial cell patterns   the apical extracellular matrix

https://www.cell.com/current-biology/fulltext/S0960-9822(23)01126-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982223011260%3Fshowall%3Dtrue

Current Biology

syb6299

1

azyx-1 is a new gene that overlaps with zyxin and   affects its translation in C. elegans, impacting muscular integrity and   locomotion

https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002300

Plogs Biology

syb7030

1

Neuronal MML-1/MXL-2 regulates systemic aging via   glutamate transporter and cell nonautonomous autophagic and peroxidase   activity

https://www.pnas.org/doi/10.1073/pnas.2221553120#executive-summary-abstract

PNAS

syb1831

1

Post-synaptic GABAA receptors potentiate transmission   by recruiting CaV2 channels to their inputs

https://www.cell.com/cell-reports/fulltext/S2211-1247(23)01173-7?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124723011737%3Fshowall%3Dtrue

Cell Reports

syb1019

1

The C. elegans PUM1, 2-like RNA binding protein PUF-8   is required for robustness of the cell death fate

https://journals.biologists.com/dev/article/doi/10.1242/dev.201167/329412/The-C-elegans-PUM1-2-like-RNA-binding-protein-PUF

Development

syb2309

1

Alternative splicing of a single exon causes a major   impact on the affinity of Caenorhabditis elegans tropomyosin isoforms for   actin filaments

https://www.frontiersin.org/articles/10.3389/fcell.2023.1208913/full

Frontiers in Cell and Developmental Biology

PHX4266 lev-11(syb4266)

1

UNC-116 and UNC-16 function with the NEKL-3 kinase to   promote axon targeting

https://journals.biologists.com/dev/article/150/18/dev201654/329524/UNC-116-and-UNC-16-function-with-the-NEKL-3-kinase

Development

syb4566
  syb4669

2

A single neuron in C. elegans orchestrates multiple   motor outputs through parallel modes of transmission

https://www.cell.com/current-biology/fulltext/S0960-9822(23)01168-5

Current Biology

unc-17(syb5779 syb5987)
  cat-1(syb7239)

2

The α-arrestin SUP-13/ARRD-15 promotes isoform turnover   of actin-interacting protein 1 in Caenorhabditis elegans striated muscle

https://academic.oup.com/pnasnexus/advance-article/doi/10.1093/pnasnexus/pgad330/7306521

PNAS Nexus

PHX4137 arrd-15(syb4137[arrd-15::gfp])

1

SIN3 acts in distinct complexes to regulate the   germline transcriptional program in C. elegans

https://journals.biologists.com/dev/article/doi/10.1242/dev.201755/333417/SIN3-acts-in-distinct-complexes-to-regulate-the

Development

syb2172
  syb2212
  syb4769

3

Glial-derived mitochondrial signals affect neuronal   proteostasis and aging

https://www.science.org/doi/10.1126/sciadv.adi1411

Science Advances

PHX3090 unc-13 (syb3090 syb2916)
  PHX3119 unc-31(syb3118, syb3119)
  PHX3684 sybIs2974[hlh-17p::NLS-FLP D5::tbb-2 30UTR; Cbr-unc-119(+)] II;   unc-119(ed3); syb3684
  PHX5532 uthEx992(hlh-17p::mitoKillerRed:tbb-2, coel::RFP)

4

6mA-Sniper: Quantifying 6mA sites in eukaryotes at   single-nucleotide resolution

https://www.science.org/doi/10.1126/sciadv.adh7912

Science Advances

PHX6478 syg-2 (syb6478)

1

Human wild-type and D76N β2-microglobulin variants are   significant proteotoxic and metabolic stressors for transgenic C. elegans

https://faseb.onlinelibrary.wiley.com/doi/full/10.1096/fba.2023-00073

FASEB BioAdvances

PHX146

1

The epithelial Na+ channel UNC-8 promotes an endocytic   mechanism that recycles presynaptic components to new boutons in remodeling   neurons

https://www.cell.com/cell-reports/fulltext/S2211-1247(23)01339-6?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124723013396%3Fshowall%3Dtrue

Cell Reports

syb1624
  syb2844

2

The Caenorhabditis elegans anchor cell transcriptome:   ribosome biogenesis drives cell invasion through basement membrane

https://journals.biologists.com/dev/article/150/9/dev201570/307319/The-Caenorhabditis-elegans-anchor-cell

Development

syb509

1

Comparing engineered nuclear-localized reporter   cassettes

https://www.micropublication.org/journals/biology/micropub-biology-001014

microPublication Biology

PHX2805
  PHX3983
  PHX3936
  PHX3997
  PHX3241
  PHX3995
  PHX4049
  PHX4020
  PHX2685
  PHX5364
  PHX2616
  PHX5536
  PHX3213
  PHX4413
  PHX3366
  PHX4374

16

Expression and function of Caenorhabditis elegans UNCP-18, a paralog of the   SM protein UNC-18

https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyad180/7289214?login=false

GENETICS

syb6377
  syb6123

2

The neuropeptidergic connectome of C. elegans

https://www.cell.com/neuron/fulltext/S0896-6273(23)00756-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0896627323007560%3Fshowall%3Dtrue

Neuron

PHX2658
  PHX3323
  PHX3411
  PHX3191
  PHX3588
  PHX2616
  PHX5536
  PHX3207
  PHX2634
  PHX2685
  OH17767(syb5463)
  PHX2704
  PHX3241
  PHX4049
  PHX2805
  PHX3936
  PHX4421
  PHX4513
  PHX3366
  PHX4374
  PHX3213
  PHX4413
  PHX4440
  PHX4514
  PHX4442
  PHX4433
  PHX4447
  PHX4453
  PHX4595
  PHX4523
  PHX4517

31

Nanoscale patterning of collagens in C. elegans apical extracellular   matrix

https://www.nature.com/articles/s41467-023-43058-9

Nature Communications

syb4568
  syb3293
  syb4687
  syb4625
  syb4549
  syb3318
  syb4583

7

The homeodomain transcriptional regulator DVE-1 directs   a program for synapse elimination during circuit remodeling

https://www.nature.com/articles/s41467-023-43281-4

Nature Communications

syb7515
  syb1984

2

Specific sensory neurons and insulin-like peptides   modulate food type-dependent oogenesis and fertilization in Caenorhabditis   elegans

https://elifesciences.org/articles/83224

eLife

syb7547

1

Distinct neurexin isoforms cooperate to initiate and   maintain foraging activity

https://www.nature.com/articles/s41398-023-02668-z

Translational Psychiatry

nrx-1(syb3797)
  nrx-1(syb3871)

2

Dynamic compartmentalization of the pro-invasive   transcription factor NHR-67 reveals a role for Groucho in regulating a   proliferative-invasive cellular switch in C. elegans

https://elifesciences.org/articles/84355

Developmental Biology

nhr-67(syb509)

1

Investigation of PAL-1 requirement in C. elegans   physiology using the auxin-inducible degradation system

https://www.micropublication.org/journals/biology/micropub-biology-001057

microPublication Biology

pal-1(syb6872)

1

SAM/SAH and C. elegans Longevity: Insights from a   Partial AHCY Deficiency Model

https://www.nature.com/articles/s41514-023-00125-1

npj Aging

syb646
  syb784

2

Immunity-linked genes are stimulated by a membrane   stress pathway linked to Golgi function and the ARF-1 GTPase

https://www.science.org/doi/10.1126/sciadv.adi5545

Science Advances

PHX2081(sybIS7080)

1

On the benefits of the tryptophan metabolite   3-hydroxyanthranilic acid in Caenorhabditis elegans and mouse aging

https://www.nature.com/articles/s41467-023-43527-1

Nature Communications

haao-1(syb2665)
  kynu-1(syb2691)

2

baz-2 enhances systemic proteostasis in vivo by   regulating acetylcholine metabolism

https://www.cell.com/cell-reports/fulltext/S2211-1247(23)01589-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124723015899%3Fshowall%3Dtrue#

Cell Reports

syb2584

1

A dicer-related helicase opposes the age-related   pathology from SKN-1 activation in ASI neurons

https://www.pnas.org/doi/10.1073/pnas.2308565120

PNAS

syb2619
  syb2597
  syb7642

3

The Muscleblind-like protein MBL-1 regulates microRNA   expression in Caenorhabditis elegans through an evolutionarily conserved   autoregulatory mechanism

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1011109#abstract0

PLOS Genetics

syb4318
  syb4345
  syb5299

3

Redundant microtubule crosslinkers prevent meiotic   spindle bending to ensure diploid offspring in C. elegans

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1011090

PLOS Genetics

syb3914

1

Total

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